% A B tiles, very and only somewhat supersaturated
xgrow AB Gse=7 Gmc=13.9 block=3 seed=130,130,1
xgrow AB Gse=7 Gmc=12 block=3 seed=130,130,1
xgrow AB Gse=7 Gmc=13 block=3 addflakes=130,130,1:100@18

% A B tiles, quickly nucleating
xgrow AB Gse=7 Gmc=11 block=3 seed=130,130,1

% A B tiles growing rapidly
% note the domain boundaries due to 0.1-strength bonds 
% (wouldn't happen if bonds were exactly 0-strength, since xgrow doesn't such add tiles by default)
xgrow AB Gse=7 Gmc=7 block=3 seed=130,130,1

% A B tiles with limited monomer concentration
xgrow AB Gse=7 Gmc=11 block=3 seed=130,130,1 Gfc=18

% bar code tiles
xgrow barcode Gse=7 Gmc=13.9 block=3 seed=130,130,1
xgrow barcode Gse=7 Gmc=7 block=3 seed=130,130,1
xgrow barcode Gse=7 Gmc=11 block=3 seed=130,130,1 Gfc=18

% bar code, nucleated
xgrow barseed Gse=7 Gmc=13.9 block=3 seed=180,180,5
xgrow barseed Gse=7 Gmc=13.9 block=3 seed=180,180,5 Gfc=22
xgrow barseed Gse=11 Gmc=21.8 block=3 seed=180,180,5
xgrow barseed T=2 block=3 seed=180,180,5

% a variant of the same idea...
xgrow lines1 Gse=7 Gmc=13.9 block=3
xgrow lines2 Gse=7 Gmc=13.9 block=3

% small squares, large squares
xgrow UnarySquare Gse=11 Gmc=21.8 block=10 seed=130,130,1
xgrow CombSquare Gse=11 Gmc=21.8 block=10 seed=130,130,1
xgrow BinaryCounterSquare Gse=11 Gmc=21.8 block=10 seed=130,130,1
xgrow BinaryCounterSquare Gse=15 Gmc=29 block=10 seed=130,130,1
xgrow BinaryCounterSquare T=2

% unseeded growth (compare different seeds)

xgrow UnarySquare T=2 addflakes=10,10,1:1@0 addflakes=10,15,2:1@0 addflakes=10,20,3:1@0 addflakes=15,10,4:1@0 addflakes=15,15,5:1@0 addflakes=15,20,6:1@0 addflakes=20,10,7:1@0 addflakes=20,15,8:1@0 addflakes=20,20,9:1@0

xgrow UnarySquare addflakes=10,10,1:1@0 addflakes=10,15,2:1@0 addflakes=10,20,3:1@0 addflakes=15,10,4:1@0 addflakes=15,15,5:1@0 addflakes=15,20,6:1@0 addflakes=20,10,7:1@0 addflakes=20,15,8:1@0 addflakes=20,20,9:1@0

% Sierpinski XOR rule tiles by themselves
xgrow XOR Gse=7 Gmc=12 block=3 seed=130,130,1
xgrow XOR addflakes=130,130,1:100@24

% Sierpinski growth
xgrow sierpinski Gse=7 Gmc=12 block=3
xgrow sierpinski Gse=10 Gmc=19.8 block=3
xgrow sierpinksi T=2

% hydrolysis of tiles with mismatched input sticky ends -- helps! (but it's unstable)
xgrow sierpinski Gse=7 Gmc=12 block=3 Gam=7 Gseh=3.5 Gao=10

% ...but not if reactions can't distinguish input from output sides
xgrow sierpinski Gse=7 Gmc=12 block=3 Gam=7 Gseh=3.5 Gao=0

% ...(just a little goes a long way, near the melting transition)
xgrow sierpinski Gse=6.2 Gmc=12 block=3 Gam=7 Gseh=3.5 Gao=2

% ...are the proofreading tiles stable to hydrolysis?
xgrow sierpinski2x2 Gse=6.2 Gmc=12 block=3 Gam=7 Gseh=3.5 Gao=2


% transmittable hydrolysis can lead to dynamic instability
xgrow sierpinski Gse=7 Gmc=13.5 block=3 Gseh=6 Gah=14 Gas=25

% ... or to weirdness
xgrow sierpinski Gse=7 Gmc=12 block=3 Gseh=5 Gah=14

% infinite binary counter
xgrow BinaryCounter Gse=10 Gmc=19.8 block=3


%%% irreversible Tile Assembly Model

xgrow barseed T=2 block=2 seed=180,180,1
xgrow barseed T=2 block=2 seed=180,180,5
xgrow lines1 T=2 block=2 
xgrow lines2 T=2 block=2
xgrow lines1 T=1 block=2
xgrow BinaryCounter T=2 block=2
xgrow sierpinski T=2
xgrow AB T=1 seed=130,130,1
xgrow barcode T=1 seed=130,130,1

%%%%% multiple flakes

xgrow barcode block=3 Gmc=15 Gse=10 addflakes=130,130,1:100@24

xgrow barcode block=3 Gmc=15 Gse=10 addflakes=130,130,1:1@20 addflakes=130,130,1:1@21 addflakes=130,130,1:1@22 addflakes=130,130,1:1@23